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@GoekeLab

Göke Lab

Computational Transcriptomics - Third Generation Sequencing

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  1. sg-nex-data sg-nex-data Public

    Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

    Jupyter Notebook 95 24

  2. bambu bambu Public

    Reference-guided transcript discovery and quantification for long read RNA-Seq data

    R 173 22

  3. xpore xpore Public

    Identification of differential RNA modifications from nanopore direct RNA sequencing

    Python 131 23

  4. m6anet m6anet Public

    Detection of m6A from direct RNA-Seq data

    Python 100 17

  5. bioinformatics-workflows bioinformatics-workflows Public

    minimal example implementations for bioinformatics workflow managers

    Python 252 43

  6. awesome-nanopore awesome-nanopore Public

    A curated list of awesome nanopore analysis tools.

    221 42

Repositories

Showing 10 of 16 repositories
  • sg-nex-data Public

    Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

    GoekeLab/sg-nex-data’s past year of commit activity
    Jupyter Notebook 95 24 7 0 Updated Jun 27, 2024
  • bambu-singlecell-spatial Public

    Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu

    GoekeLab/bambu-singlecell-spatial’s past year of commit activity
    Nextflow 2 GPL-3.0 0 1 0 Updated Jun 25, 2024
  • bambu Public

    Reference-guided transcript discovery and quantification for long read RNA-Seq data

    GoekeLab/bambu’s past year of commit activity
    R 173 GPL-3.0 22 27 6 Updated May 3, 2024
  • xpore Public

    Identification of differential RNA modifications from nanopore direct RNA sequencing

    GoekeLab/xpore’s past year of commit activity
    Python 131 MIT 23 31 1 Updated Apr 29, 2024
  • awesome-nanopore Public

    A curated list of awesome nanopore analysis tools.

    GoekeLab/awesome-nanopore’s past year of commit activity
    221 MIT 42 1 0 Updated Nov 30, 2023
  • m6anet Public

    Detection of m6A from direct RNA-Seq data

    GoekeLab/m6anet’s past year of commit activity
    Python 100 MIT 17 31 0 Updated Nov 21, 2023
  • NanoporeRNASeq Public

    Nanopore RNASeq data

    GoekeLab/NanoporeRNASeq’s past year of commit activity
    R 8 MIT 1 0 0 Updated Oct 25, 2022
  • proActiv Public

    Estimation of Promoter Activity from RNA-Seq data

    GoekeLab/proActiv’s past year of commit activity
    R 45 14 11 0 Updated Jan 24, 2022
  • nanoseq Public Forked from nf-core/nanoseq

    Nanopore demultiplexing, QC and alignment pipeline

    GoekeLab/nanoseq’s past year of commit activity
    Nextflow 4 MIT 76 0 0 Updated Dec 17, 2021
  • containers Public Forked from BioContainers/containers

    Bioinformatics containers

    GoekeLab/containers’s past year of commit activity
    Dockerfile 2 Apache-2.0 242 0 0 Updated Nov 3, 2021

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