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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


Research Interest

Microecological Analysis and Intervention

Analysis and intervention of gut microecology in patients with polycystic ovary syndrome based on phage-bacteria-human host interaction (supported by the National Science Foundation of China, No. 32270677).

Bioinformaitcs tool development

The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler), phylogenetic data integration and visualization (e.g., treeio and ggtree), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 967 247

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 818 172

  3. ChIPseeker ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    R 214 74

  4. MicrobiotaProcess MicrobiotaProcess Public

    🦠 A comprehensive R package for deep mining microbiome

    R 171 36

  5. ProjectYulab ProjectYulab Public

    ⏭️ Small coding tasks that enable you to participate in our development

    34 3

  6. plotbb plotbb Public

    🖌️ Grammar of Graphics for base plot

    R 52 7

Repositories

Showing 10 of 88 repositories
  • obolite Public

    Create sqlite from an obo file

    YuLab-SMU/obolite’s past year of commit activity
    R 0 0 0 0 Updated Jul 14, 2024
  • enrichplot Public

    Visualization of Functional Enrichment Result

    YuLab-SMU/enrichplot’s past year of commit activity
    R 223 65 114 1 Updated Jul 12, 2024
  • yulab-smu.github.io Public

    🏠 Homepage for YuLab-SMU

    YuLab-SMU/yulab-smu.github.io’s past year of commit activity
    HTML 12 4 0 0 Updated Jul 12, 2024
  • learnggtree Public

    Tutorial for Learning 'ggtree'

    YuLab-SMU/learnggtree’s past year of commit activity
    Makefile 5 0 0 0 Updated Jul 11, 2024
  • SVP Public
    YuLab-SMU/SVP’s past year of commit activity
    R 4 GPL-3.0 0 0 0 Updated Jul 10, 2024
  • YuLab-SMU/wikiprofiler’s past year of commit activity
    R 5 4 0 0 Updated Jul 1, 2024
  • YuLab-SMU/tigeR.data’s past year of commit activity
    R 0 1 1 0 Updated Jul 1, 2024
  • ggsc Public

    🧠 Visualizing Single Cell and Spatial Transcriptomics

    YuLab-SMU/ggsc’s past year of commit activity
    R 32 4 0 0 Updated Jun 25, 2024
  • tigeR Public

    🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package

    YuLab-SMU/tigeR’s past year of commit activity
    R 6 7 0 0 Updated Jun 20, 2024
  • aplotExtra Public

    Creating composite plot using 'aplot'

    YuLab-SMU/aplotExtra’s past year of commit activity
    R 8 4 0 0 Updated Jun 17, 2024

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