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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 612 362

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 286 70

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 270 72

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 247 146

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 137 85

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 107 17

Repositories

Showing 10 of 173 repositories
  • PyBenchFramework Public

    BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.

    flatironinstitute/PyBenchFramework’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 16, 2024
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 68 MIT 7 83 6 Updated Jul 16, 2024
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 270 72 39 (3 issues need help) 6 Updated Jul 16, 2024
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 3 Apache-2.0 1 23 4 Updated Jul 16, 2024
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1’s past year of commit activity
    Jupyter Notebook 3 MIT 0 15 5 Updated Jul 16, 2024
  • nifty-ls Public

    A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

    flatironinstitute/nifty-ls’s past year of commit activity
    Python 20 Apache-2.0 1 1 0 Updated Jul 16, 2024
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    flatironinstitute/jax-finufft’s past year of commit activity
    Python 72 Apache-2.0 2 5 1 Updated Jul 15, 2024
  • inverse-volume-scattering2d Public

    This repository contains beta MATLAB codes for data generation of forward medium problems using a hybrid HPS-HBS solver, and an inverse medium solver

    flatironinstitute/inverse-volume-scattering2d’s past year of commit activity
    MATLAB 3 2 0 0 Updated Jul 15, 2024
  • cryo_em_SBI Public
    flatironinstitute/cryo_em_SBI’s past year of commit activity
    Python 4 0 20 0 Updated Jul 12, 2024
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 612 GPL-2.0 362 57 (1 issue needs help) 6 Updated Jul 12, 2024
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