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@neherlab

neherlab

Computational biology at the Biozentrum, Basel

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  1. covid19_scenarios covid19_scenarios Public

    Models of COVID-19 outbreak trajectories and hospital demand

    JavaScript 1.4k 355

  2. treetime treetime Public

    Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

    Jupyter Notebook 214 55

  3. pan-genome-analysis pan-genome-analysis Public

    Processing pipeline for pan-genome visulization and exploration

    Python 133 37

  4. SARS-CoV-2_variant-reports SARS-CoV-2_variant-reports Public

    Informal summaries of notable SARS-CoV-2 lineages

    105 12

  5. pangraph pangraph Public

    A bioinformatic toolkit to align genome assemblies into pangenome graphs

    Julia 77 7

  6. pan-genome-visualization pan-genome-visualization Public

    Forked from wdingx/pan-genome-visualization

    Visualization of the pan-genome output by panX

    JavaScript 59 14

Repositories

Showing 10 of 84 repositories
  • pangraph Public

    A bioinformatic toolkit to align genome assemblies into pangenome graphs

    neherlab/pangraph’s past year of commit activity
    Julia 77 MIT 7 8 2 Updated Jul 16, 2024
  • neherlab/nextclade_data_workflows’s past year of commit activity
    Python 4 1 10 1 Updated Jul 16, 2024
  • treetime Public

    Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

    neherlab/treetime’s past year of commit activity
    Jupyter Notebook 214 MIT 55 28 3 Updated Jul 16, 2024
  • neherlab/phylogeography’s past year of commit activity
    Python 0 0 0 0 Updated Jul 3, 2024
  • SARS-CoV-2_variant-reports Public

    Informal summaries of notable SARS-CoV-2 lineages

    neherlab/SARS-CoV-2_variant-reports’s past year of commit activity
    105 12 2 3 Updated May 27, 2024
  • CCHFV Public
    neherlab/CCHFV’s past year of commit activity
    Python 0 0 0 0 Updated May 15, 2024
  • neherlab/h5nx-Clades’s past year of commit activity
    Python 0 2 0 0 Updated May 7, 2024
  • neherlab/HIV-nextclade’s past year of commit activity
    Python 0 0 0 0 Updated May 6, 2024
  • neherlab/simple-annotator’s past year of commit activity
    Python 0 0 0 0 Updated Feb 29, 2024
  • spike-only Public

    Spike-only SARS-CoV-2 Nextstrain build

    neherlab/spike-only’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Dec 13, 2023