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Issues: snakemake/snakemake
Announcement: Snakemake 8.0 released, including the removal o...
#2409
opened Aug 15, 2023 by
johanneskoester
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8.16.0: Cannot be installed because datrie no longer builds with GCC 14
bug
Something isn't working
#2970
opened Jul 16, 2024 by
sanjayankur31
Database instead of file-based logging and book keeping? Performance issues on HPC with many Snakemake users and millions of meta files
enhancement
New feature or request
#2969
opened Jul 16, 2024 by
tamasgal
Job scripts that allow batch execution
enhancement
New feature or request
#2968
opened Jul 16, 2024 by
eternal-flame-AD
Performance degradation after running snakemake for some time
bug
Something isn't working
#2967
opened Jul 15, 2024 by
laf070810
os.relpath
fails when --conda-prefix
points to a different drive on Windows
bug
#2964
opened Jul 15, 2024 by
brynpickering
"ancient" not working with checkpoints
bug
Something isn't working
#2962
opened Jul 14, 2024 by
lczech
Error collecting tests in tests/test_script_py/scripts/test_explicit_import.py
bug
Something isn't working
#2961
opened Jul 11, 2024 by
musicinmybrain
Apptainer is unable to create log files from stderr
bug
Something isn't working
#2959
opened Jul 10, 2024 by
pdimens
Chained checkpoints are not evaluated correctly
bug
Something isn't working
#2958
opened Jul 10, 2024 by
lczech
RuntimeWarning: coroutine 'DAG.sanitize_local_storage_copies' was never awaited
bug
Something isn't working
#2957
opened Jul 10, 2024 by
lczech
snakemake --list-changes code
fails with TypeError: object async_generator can't be used in 'await' expression
bug
#2956
opened Jul 10, 2024 by
denisalevi
The directory of the output file is created by Snakemake before the program runs
bug
Something isn't working
#2955
opened Jul 10, 2024 by
yiyenl
Snakemake spontaneously interrupts jobs when running singularity with nohup
bug
Something isn't working
#2954
opened Jul 9, 2024 by
harrymatthews50
Slow DAG building and job completion due to large file checksumming
enhancement
New feature or request
#2949
opened Jul 8, 2024 by
laf070810
How can one check whether the current run is a dryrun?
enhancement
New feature or request
#2948
opened Jul 8, 2024 by
mhorlacher
All rules executing as local rules
question
Further information is requested
#2947
opened Jul 5, 2024 by
karltayeb
conda post-deploy script not run for global env?
bug
Something isn't working
#2935
opened Jun 28, 2024 by
sdruskat
Snakemake runs interactively with slurm but fails when submitting the slurm script
bug
Something isn't working
question
Further information is requested
#2934
opened Jun 27, 2024 by
kf-cuanschutz
Error when cleaning up metadata when using workdir in snakefile
bug
Something isn't working
#2933
opened Jun 27, 2024 by
tbenavi1
How to debug snakemake files and referenced python scripts in IDEs like PyCharm or VsCode?
enhancement
New feature or request
#2932
opened Jun 27, 2024 by
fhg-isi
Separately specifying group job "width" and "depth"
enhancement
New feature or request
#2931
opened Jun 26, 2024 by
kdm9
Slow DAG postprocessing on high-latency filesystems
enhancement
New feature or request
#2920
opened Jun 16, 2024 by
benjeffery
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