A python package for fast post translational modification localization, powered by Cython.
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Updated
Dec 15, 2023 - Python
A python package for fast post translational modification localization, powered by Cython.
Analytical R Tools for Mass Spectrometry
Web scraper for UniProt and iPTMnet database
Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments
Proteomics Mass Spectrometry Datasets for Machine Learning
A machine learning tool to assign edges in protein-protein interaction networks with a function.
Toolkit for concretely describing non-canonical DNA, RNA, and proteins
This project is conduct research using deep learning to predict phosphorylation site in protein sequences
CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid mod…
EpiProfile 2.0: A Computational Platform for Processing Epi-Proteomics Mass Spectrometry Data
Python implementation of BayesENproteomics with user-customised models and other additional features
Non-linear Bayesian elastic net regression for calculating protein and PTM fold changes from peptide intensities in label-free, bottom-up proteomics on heterogeneous primary human samples.
Code and datasets for the publication "Recurrent Neural Network-based Prediction of O-GlcNAcylation Sites in Mammalian Proteins"
R-based package for detecting differencially abundant post translational modifications (PTM) in shotgun mass spectrometry-bsed proteomic experiments with tandem mass tag (TMT) labeling
Validation of modified amino acid sites in peptide sequences by identifying immonium ions in the raw spectra (.mgf format)
Protein Language Model (pLM) Powered Protein Crotonylation (Kcr) Modified Site Predictor
A machine learning tool to assign edges in protein-protein interaction networks with a function.
Improving Protein Succinylation Sites Prediction Using Features Extracted from Protein Language Model
One minute analysis of histone post-translational modifications by direct infusion mass spectrometry
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