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"I performed the gseGO function using clusterProfiler for all ontologies together, but I wasn't able to apply the simplify function to remove redundancy. I tried various options suggested online, but none worked. As a workaround, I ran gseGO for each ontology (BP, MF, CC) separately and then removed redundancy for each ontology using GOsim. Is it correct to combine the results from all ontologies into one file and then combining it with metadata from one ontology (e.g., the output of gseGO for BP) to create enrichment plots?" or what could be the easiest way to perfrom that
#707
opened Jul 16, 2024 by
Sidragull57
8 tasks
"400 Bad Request" using enrichKEGG function from the clusterProfiler
#706
opened Jul 15, 2024 by
RouaPopescu
The GeneRatio denominator does not correspond to the number of input genes.
#703
opened Jul 10, 2024 by
CharlineJnnt
FeatureRequest: color category and gene labels differently in
cnetplot
#700
opened Jun 28, 2024 by
wbvguo
How do I change the width of each coloum in the heatmap in the treeplot?
#692
opened May 8, 2024 by
CyrusWang57
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