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@edamontology

EDAMontology

EDAMontology is an umbrella organisation for the development and maintenance of the EDAM ontology and related tools and works.

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  1. edamontology edamontology Public

    EDAM is an ontology of bioscientific data analysis and data management. EDAM concentrates on topics, operations, types of data, and data formats related to analysis, modelling, optimisation, and da…

    Shell 116 58

  2. edam-bioimaging edam-bioimaging Public

    Ontology of bioimage informatics operations, topics, types of data, and data formats. EDAM-Bioimaging is an extension of the EDAM ontology (edamontology.org) dedicated to bioimaging data analysis, …

    Shell 8 8

  3. edam-browser edam-browser Public

    Stand-alone, lightweight, and fast JavaScript browser for EDAM and other ontologies

    JavaScript 13 23

  4. edam-popovers edam-popovers Public

    A Firefox & Chrome extension that displays detailed information about EDAM concepts

    JavaScript 4 3

  5. edamontologyDocs edamontologyDocs Public

    Documentation for EDAM.

    Makefile 1 3

  6. edammap edammap Public

    A tool for mapping various text input to EDAM ontology concepts

    Java 9 5

Repositories

Showing 10 of 25 repositories
  • edam-sandbox Public

    Miscellaneous files for test purposes

    edamontology/edam-sandbox’s past year of commit activity
    Jupyter Notebook 1 2 37 (1 issue needs help) 6 Updated Jul 6, 2024
  • edam-browser Public

    Stand-alone, lightweight, and fast JavaScript browser for EDAM and other ontologies

    edamontology/edam-browser’s past year of commit activity
    JavaScript 13 MIT 23 25 (3 issues need help) 5 Updated Jul 5, 2024
  • edam2json-js Public

    Javascript library to convert EDAM to JSON/JSON-LD

    edamontology/edam2json-js’s past year of commit activity
    JavaScript 3 MIT 2 1 0 Updated Jul 5, 2024
  • caseologue Public

    Validation tools for the EDAM ontology

    edamontology/caseologue’s past year of commit activity
    CSS 1 MIT 3 5 (2 issues need help) 1 Updated Jul 5, 2024
  • edam-fu Public

    EDAM ontology formatting utility

    edamontology/edam-fu’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 4, 2024
  • edamontology.github.io Public

    obsolete repo for the EDAM ontology website (redirects to edamontology.org)

    edamontology/edamontology.github.io’s past year of commit activity
    HTML 0 1 0 0 Updated Jul 4, 2024
  • edamxpathvalidator Public archive

    Verification script for the EDAM ontology

    edamontology/edamxpathvalidator’s past year of commit activity
    Python 0 GPL-3.0 0 15 (1 issue needs help) 1 Updated Jul 4, 2024
  • edamontology Public

    EDAM is an ontology of bioscientific data analysis and data management. EDAM concentrates on topics, operations, types of data, and data formats related to analysis, modelling, optimisation, and data life-cycle in biosciences, and in other research and science-based applications.

    edamontology/edamontology’s past year of commit activity
    Shell 116 CC-BY-SA-4.0 58 205 (17 issues need help) 36 Updated Jun 23, 2024
  • edam-geo Public

    Extension of EDAM towards geo- and other sciences, including Earth and planetary sciences, climate science, ecology, public health, environmental monitoring, emergency management, etc. Everyone welcome to view & comment at https://webprotege.stanford.edu/#projects/69591619-4eda-4f03-9e7f-65b213038fe1/edit/Classes (free registration needed).

    edamontology/edam-geo’s past year of commit activity
    Shell 0 CC-BY-SA-4.0 0 0 0 Updated May 31, 2024
  • edammap Public

    A tool for mapping various text input to EDAM ontology concepts

    edamontology/edammap’s past year of commit activity
    Java 9 GPL-3.0 5 1 0 Updated May 23, 2024
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