samtools
Here are 90 public repositories matching this topic...
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
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Jul 16, 2024 - C++
WebAssembly modules for genomics
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Jun 22, 2024 - C
NGLess: NGS with less work
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May 8, 2024 - Haskell
Multi-sample somatic variant caller
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Jan 27, 2022 - R
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Oct 3, 2022 - Forth
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
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Jan 17, 2024 - Shell
The ChIP-Seq peak calling algorithm using convolution neural networks
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Jan 18, 2021 - Python
Genopo a.k.a. F5N - A nanopore sequencing analysis toolkit for Android smartphones https://nanoporetech.com
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Aug 2, 2021 - Java
RNAseq pipeline for alternative splicing junctions
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Jun 27, 2024 - R
A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
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Jan 7, 2024 - Java
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
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Mar 27, 2020 - Shell
Snakemake pipeline for Popoolation and Popoolation2
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Apr 26, 2024 - Perl
Library-free horizontal transfer detection, with a focus on transposable element invasions
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Jun 14, 2024 - Shell
Collecting Genotypes from ENA and make their SNPs
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Sep 27, 2021 - Python
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