C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
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Updated
Apr 28, 2024 - C++
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
Graph realignment tools for structural variants
💾 📃 "Reads to report" for public health and clinical microbiology
Efficient genotyping bi-allelic SNPs on single cells
A method for variant graph genotyping based on exact alignment of k-mers
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
Toolkit for VNTR genotyping and repeat-pan genome graph construction
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Genotyping of segregating mobile elements insertions
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates
Python library for simple and complex indels.
An efficient genetic data imputation pipeline
emm Automatic Isolate Labeller
A simple python library to identify the most likely strain from the population
Visualisation application for Klebsiella genotypes generated by Kleborate.
genotyping by Mapping-free ALternate-allele detection of known VAriants
SV genotyper for long reads with a variation graph
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